Adnan Darwiche's UCLA course: Learning and Reasoning with Bayesian Networks.
Discusses causal inference with Bayesian networks, focusing on answering interventional and counterfactual queries.
Watch out for Judea Pearl's upcoming “The Book of Why,” a broadly accessible book on cause and effect. The table of contents and the first three chapters are available for free at:
http://bayes.cs.ucla.edu/WHY/
