Code generated in the video can be downloaded from here:
https://github.com/bnsreenu/python_for_microscopists/blob/master/288_nuclei_tracking_trackpy_stardist.ipynb
All other code:
https://github.com/bnsreenu/python_for_microscopists
This video walks you through the process of segmenting nuclei in fluorescence microscope images using StarDist (pre-trained deep learning model), followed by tracking them using trackpy.
Trackpy installation: http://soft-matter.github.io/trackpy/dev/installation.html
Trackpy strongly recommends using Conda and not pip. Therefore, we need to set up conda environment for our colab notebook.
This specific topic has been covered in a separate tutorial: https://youtu.be/v4qskw8EHXQ
