Countdown: 0:00
Introduction: 5:00
Install BCFTools: 9:15
bcftools mpileup: 13:00
bcftools call: 36:55
bcftools norm: 53:13
bcftools filter: 55:38
In lesson #48 we use the BCFTools variant calling pipeline to determine SNVs and small INDELs from our bacterial genome alignments.
Walk through a practical introduction to bioinformatics skills with me while working from home during the Covid-19 pandemic. Aimed at wet-lab types who want to take this unique and strange opportunity to begin learning some bioinformatics.
I am going to begin at the beginning and take it nice and slow. Our first aim will be to develop the skills required to analyse and visualise a (covid-relevant) RNA-Seq dataset.
