How to run a surface-based analysis in the CONN toolbox.
Appendix D of the CONN tutorial of Andy's Brain Book: https://tinyurl.com/29atxdbf
Arithmetic dataset on OpenNeuro: https://openneuro.org/datasets/ds002422/versions/1.1.0
FreeSurfer Tutorial: https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FreeSurfer_Introduction.html
Parallelizing recon-all: https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FS_ShortCourse/FS_04_ReconAllParallel.html
Table of Contents
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0:00 Advantages of surface-based analysis
1:12 Running recon-all on the data to reconstruct the cortical surface
2:33 Creating a new CONN project
3:02 Loading the structural and functional data
4:44 Loading the FreeSurfer atlas
5:38 Running preprocessing
6:17 Checking the output
6:58 Denoising
7:25 First-level analysis
7:55 Group-level analysis
