Here we will begin our differential expression journey to learn Deseq skills by applying it to the question:
(1) What genes are enriched in the nucleus versus cytoplasm?
We will further make heatmaps with rlog values and continue to gain experience with Deseq inputs and outputs.
Code for class is here:
https://github.com/boulderrinnlab/CLASS_2023/blob/master/CLASSES/05_R_analyses/05_RNAseq/01_differential_expression/02_DESEQ_differential_expression.Rmd
