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GNPS - Feature Based Molecular Networking - Beginner Networking Tutorial

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Dec 6, 2018
8:24

In this tutorial we highlight how to use run Feature Based Molecular Networking at GNPS with a quantification table and MS2 spectra output from MZmine2. The accompanying youtube video highlighting how to perform feature detection in MZmine2 can be found here: https://www.youtube.com/watch?v=5jjMllbwD-U Accompanying written documentation: https://ccms-ucsd.github.io/GNPSDocumentation/tutorials/featurebasedgnps/ Downloaded Files Used in Tutorial: Quantification File: ftp://massive.ucsd.edu/MSV000082678/updates/2018-08-02_lfnothias_4ee107d3/other/MZmine-GNPS_AG_test_featuretable.csv MS2 Spectra MGF: ftp://massive.ucsd.edu/MSV000082678/updates/2018-08-02_lfnothias_4ee107d3/other/MZmine-GNPS_AG_test_GNPS.mgf Metadata File: ftp://massive.ucsd.edu/MSV000082678/other/metadata_GNPS_table_AMG_key_ones_cleaned.txt Demonstration Feature Based Molecular Networking GNPS Job: https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=747b36ba08434f0cb478b920decfe4ce Checkout GNPS to perform Molecular Networking, Spectral Library Search, Molecular BLAST, and more! https://gnps.ucsd.edu https://ccms-ucsd.github.io/GNPSDocumentation/ Questions? Post on the forum! https://groups.google.com/forum/#!forum/molecular_networking_bug_reports

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GNPS - Feature Based Molecular Networking - Beginner Networking Tutorial | NatokHD