GROMACS Tutorial Part 4 | MD Simulation Analysis in VMD | RMSD Calculation & Visualization

Welcome to Part 4 of the GROMACS Tutorial Series! In this video, we demonstrate how to analyze Molecular Dynamics (MD) Simulations using Visual Molecular Dynamics (VMD) with a focus on RMSD (Root Mean Square Deviation) calculations and visualization. 📌 Recommended to watch previous parts for foundational knowledge: Part 2–5: Protein-Ligand MD Simulations & Analysis Part 1: Installation of Gromacs