The molecular docking approach can be used to investigate interaction between a small molecule and a protein at the atomic level, which allow us to understand the behavior of small molecules in the binding site of target proteins, and biochemical mechanism in b’n protein and ligand molecule.
This video will provide you full step by step manual on Protein-ligand docking using Autodock
MGL Tools: http://mgltools.scripps.edu/downloads
Autogrid4 and Autdock4 : http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-0-1-and-autogrid-4-0.0
Open Babel GUI: https://github.com/openbabel/openbabel/releases
Literature:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3151162/
http://autodock.scripps.edu/faqs-help/manual
https://www.sciencedirect.com/topics/medicine-and-dentistry/autodock
