Nanoparticle Docking using AutoDock4 | Case Study: Gold Nanoparticle Docking

How to dock nanoparticle to a protein using Autodock4 and the custom AD4_paramaetrs.dat. Of course, there is no sound to the video because I haven't recorded it. So if you are not familiar with Autodock4 then please watch Autodock4 video before delving into this. First you have to create nanoparticle in this case Au/Gold nanoparticle in CHARMM-GUI using nanomaterials modeller. Once you download the pdb file process it using Discovery Studio Visualizer and save it as PDB otherwise the Autodock will fail. Then use the AD4_Parameters.dat file to process it for Autogrid and Autodock in order to run Autodock4 on Nanoparticles. This protocol applies to any sort of Nanoparticle. #GoldNanoparticles #MolecularDocking #AutoDock4 #DrugDiscovery #Nanotechnology #ProteinLigand ================================================================== Welcome to Omixium! This channel is dedicated to empowering the next generation of scientists with hands-on tutorials, deep dives, and tool walkthroughs in: 🔬 Bioinformatics & Computational Biology 🧠 AI in Drug Discovery & Protein Design ⚗️ Molecular Docking, MD Simulations & Systems Biology 🧬 Single-cell RNA-seq, Multi-omics & NGS Pipelines 👨‍💻 AI Coding for Biology (Claude, Gemini, GPT) 🧪 New videos every week — for scientists, students, coders, and curious minds! --- 🌐 Stay Connected: 🔗 LinkedIn: [Pritam Kumar Panda](https://www.linkedin.com/in/pritam-kumar-panda/) 🌍 Website: [https://www.atomodyssey.com](https://www.atomodyssey.com) 📧 Contact: [[email protected]](mailto:[email protected]) 💻 GitHub: [https://github.com/pritampanda15](https://github.com/pritampanda15)