RNA-seq course: Alignment using TopHat (old)

This tutorial from 2017 covers the TopHat aligner. We recommend that you watch the video "Aligning RNA-seq reads to reference genome" instead, which covers the more recent STAR and HISAT2 aligners: https://www.youtube.com/watch?v=dJdZk-duMZQ&t=0s&list=PLjiXAZO27elBeaOg12x_kiA1BeikqiO_f&index=3 Find the training material here: https://kannu.csc.fi/index.php/s/zqHXWdr32yOA5xo