Sequence Repeat Identification and Visualization using BLAST and Circos for Bioinformatics

Identification and visualization of sequence repeats Support My Work https://www.patreon.com/bigdataanalytics https://www.buymeacoffee.com/informatician Buy Me a Coffee https://www.buymeacoffee.com/informatician Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach Consultation(Audio Call): https://clarity.fm/vincentappiah Subscribe to my channels Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg Reach out [email protected] How to Install conda: https://youtu.be/P7fjRe6u-F0 mamba :https://youtu.be/0MmfR2dThvw blast:https://youtu.be/fGcTZ8OU_2I circos:https://youtu.be/sq7yjzOgEvA Download the data here: https://github.com/vappiah/bioinformatics-tutorials/tree/main/visualizations/circos/episode-6-sequence-repeats Download the complete materials here:https://www.patreon.com/posts/93236326 Circos links: http://circos.ca/tutorials/lessons/links/basic_links/ Supplementary information https://www.ncbi.nlm.nih.gov/nuccore/CP000325.1 https://dbsloan.github.io/TS2019/exercises/circos.html https://www.metagenomics.wiki/tools/blast/blastn-output-format-6 Chapters 00:00 Introduction 05:11 Install Tools (BLAST and Circos) using Conda or Mamba 11:51 Download the example data 14:52 Create a local BLAST database Perform a local BLAST search 32:05 Extract information from BLAST output 39:14 Generate karyotype 40:54 Format the input files 43:50 Generate Circos Ideogram 51:11 Add the sequence repeat information to the circos Plots 55:49 Change the length of the sequence in the karyotype file 56:50 Add GC Skew to the circos plot bioinformatics for beginners bioinformatics tutorial bioinformatics course Bioinformatics Project #bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux