Single-cell analysis with scVI machine-learning toolkit

I show dataset integration, clustering, and differential expression. This is an introduction to the advanced python machine learning scVI toolkit. This is a high-powered toolkit capable of many things and it also allows users to easily integrate their own downstream machine-learning workflows. Notebook: https://github.com/mousepixels/sanbomics_scripts/blob/main/scVI_tools_introduction.ipynb 0:00 intro 0:23 Preparing data 3:14 core scVI 9:31 marker genes 11:06 Differential expression