Tassel 5 - GBS - Production SNP Calling - Tutorial

It took me too long to run this pipeline by myself. Thanks to Matt Murray (UW Madison) who helped me with this I could make it. So I decided to share this and make it easy for other people that are going to try. If someone disagree of some step, or the way It was done, let me a message. The idea here is to share the knowledge and not to compete.