Single Cell Genomics, Transcriptomics & Proteomics

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Latest Videos

Perform scRNA data integration with SCTransform normalized datasets

Install and Run Space Ranger

Spatial Transcriptomics Data Deconvolution with cell2location in Python

Spatial Data Analysis using STutility Non-negative Matrix Factorization (NMF)

Spatial Data Deconvolution using Robust Cell Type Decomposition (RCTD) Part II

Spatial Data Deconvolution using Robust Cell Type Decomposition (RCTD) Part I

Spatial Data Analysis In QuPath How to Perform Multiplexed Analysis using Machine Learning method

Spatial Data Analysis In QuPathHow to Perform Multiplexed Analysis using Simple Thresholding Method

Spatial Data Analysis Using QuPath How to Perform Cell Segmentation Using StarDist in QuPath

Cell-cell Communication Analysis：How to use the Liana package

Running Cell Ranger count

Download and Install Cell Ranger

How to download raw scRNA-seq data from NCBI using sratoolkit

Nanostring CosMx 19K Gene Panel Human Pancreas Spatial Dataset

Nanostring CosMx Mouse Neuroscience RNA Panel

Converting Seurat Object into Scanpy Object in R Markdown

Converting Scanpy Object into Seurat Object in R Markdown

Analzye Visium High Definition Spatial Dataset with Seurat

Recreate Seurat Cell Clusters from Xenium Onboard Analysis

Microbiome Data Analysis Video 3 Create a phyloseq object

Microbiome Data Analysis in R--Video 2 Prepare otu_table from raw fastq files

Microbiome Data Analysis in R--Video 1 Prepare otu_table from raw fastq files

Identify Doublets using Doubletdetection Package in Python

Identify Doublets using Scrublet Package in Scanpy

Build Metacells with SuperCell & Analyse Metacells with Seurat

Create Volcano Plot using the EnhancedVolcano Package

SEACell Video Tutorial 2 Create Metacells from scRNA-seq Data

SEACell Video Tutorial 1 Create Metacells from scRNA-seq Data

CellRank Video Tutorial 7 Cluster Genes with Similar Expression Trends

CellRank Video Tutorial 6 Visualize Gene Expression Trends