Alex Soupir

5.22K subscribers

48 videos

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Scientist in cancer research constantly learning new methods, technologies, and applying them to help understand disease.

Latest Videos

Deploying a Multi-Node LLM on an HPC Cluster with vLLM

Deploying a Multi-Node LLM on an HPC Cluster with vLLM

Alex Soupir

1.7K views·9 months ago

From Image to Embroidery

From Image to Embroidery

Alex Soupir

1.1K views·9 months ago

Keeping Interactive Jobs Running While Closing the Terminal - TMUX

Keeping Interactive Jobs Running While Closing the Terminal - TMUX

Alex Soupir

320 views·1 year ago

SpaitalGE-Web - A User-Friendly Platform for Spatial Transcriptomics

SpaitalGE-Web - A User-Friendly Platform for Spatial Transcriptomics

Alex Soupir

306 views·1 year ago

Spatial Transcriptomics - Part 4.1 Supervised Phenotyping with InSituType

Spatial Transcriptomics - Part 4.1 Supervised Phenotyping with InSituType

Alex Soupir

931 views·2 years ago

Testing Pytorch Auto-Encoder Code (Deep Learning)

Testing Pytorch Auto-Encoder Code (Deep Learning)

Alex Soupir

384 views·2 years ago

Spatial Transcriptomics - Part 7 Ligand-Receptor Spatial Autocorrelation

Spatial Transcriptomics - Part 7 Ligand-Receptor Spatial Autocorrelation

Alex Soupir

635 views·2 years ago

Docker Containers from Dockerhub with TrueNAS Scale

Docker Containers from Dockerhub with TrueNAS Scale

Alex Soupir

29.4K views·2 years ago

Spatial Transcriptomics - Part 6.2 Spatial Permutations of High Scores

Spatial Transcriptomics - Part 6.2 Spatial Permutations of High Scores

Alex Soupir

405 views·2 years ago

Spatial Transcriptomics - Part 6.1 Spatial Gene Set Enrichment Analysis

Spatial Transcriptomics - Part 6.1 Spatial Gene Set Enrichment Analysis

Alex Soupir

813 views·2 years ago

Immuno-Oncology - Research In Progress (RIP)

Immuno-Oncology - Research In Progress (RIP)

Alex Soupir

202 views·2 years ago

Programming-Free Spatial Transcriptomics Analysis with spatialGE- Part 1

Programming-Free Spatial Transcriptomics Analysis with spatialGE- Part 1

Alex Soupir

506 views·2 years ago

Multiple Sequence Alignment at the Terminal with Conda

Multiple Sequence Alignment at the Terminal with Conda

Alex Soupir

1.2K views·2 years ago

Spatial Clustering with spatialTIME - Understanding Ripley's K and Nearest Neighbor G

Spatial Clustering with spatialTIME - Understanding Ripley's K and Nearest Neighbor G

Alex Soupir

2.6K views·2 years ago

Spatial Transcriptomics - Part 5 Univariate Spatial Clustering Calculation

Spatial Transcriptomics - Part 5 Univariate Spatial Clustering Calculation

Alex Soupir

744 views·2 years ago

Running RStudio with Docker

Running RStudio with Docker

Alex Soupir

3.8K views·2 years ago

Assembling First Server Rack - Vivo 12U

Assembling First Server Rack - Vivo 12U

Alex Soupir

2.6K views·2 years ago

Creating a conda Environment for Pytorch and Cuda

Creating a conda Environment for Pytorch and Cuda

Alex Soupir

30.6K views·2 years ago

Spatial Transcriptomics - Part 4 Unsupervised InSituType

Spatial Transcriptomics - Part 4 Unsupervised InSituType

Alex Soupir

1.0K views·2 years ago

Spatial Transcriptomics - Part 3 Normalization and Dimension Reduction

Spatial Transcriptomics - Part 3 Normalization and Dimension Reduction

Alex Soupir

1.7K views·2 years ago

Spatial Transcriptomics - Part 2 Exploring Seurat Object

Spatial Transcriptomics - Part 2 Exploring Seurat Object

Alex Soupir

3.8K views·2 years ago

Spatial Transcriptomics Intro - Part 1 What Is Spatial Transcriptomics

Spatial Transcriptomics Intro - Part 1 What Is Spatial Transcriptomics

Alex Soupir

8.4K views·2 years ago

Creating Simple Data Transformation API with RRStudio

Creating Simple Data Transformation API with RRStudio

Alex Soupir

1.3K views·2 years ago

Creating Data Logger with Arduino Uno

Creating Data Logger with Arduino Uno

Alex Soupir

1.7K views·3 years ago

Bioinformatics - Identifying New RNA-seq Splice Junctions (Timestamps)

Bioinformatics - Identifying New RNA-seq Splice Junctions (Timestamps)

Alex Soupir

2.4K views·5 years ago

Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)

Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)

Alex Soupir

7.2K views·5 years ago

Bioinformatics - fastp FastQ Preprocessing Tool (Timestamps)

Bioinformatics - fastp FastQ Preprocessing Tool (Timestamps)

Alex Soupir

11.0K views·5 years ago

Setting up Window Subsystem for Linux (WSL1)

Setting up Window Subsystem for Linux (WSL1)

Alex Soupir

3.4K views·5 years ago

iTIME interactive Tumor Immune MicroEnvironment! (#Hackathon2020)

iTIME interactive Tumor Immune MicroEnvironment! (#Hackathon2020)

Alex Soupir

268 views·5 years ago

Bioinformatics - Prokaryote Pan Genome with Roary! (Timestamps)

Bioinformatics - Prokaryote Pan Genome with Roary! (Timestamps)

Alex Soupir

11.2K views·5 years ago

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