Hubbard Center for Genome Studies (HCGS)

Genome annotation and inferring function

Hubbard Center for Genome Studies (HCGS)

Sequencing and assembling a genome

Hubbard Center for Genome Studies (HCGS)

Data structures and conventions

Hubbard Center for Genome Studies (HCGS)

Generation of genomic data NGS sequencing

Hubbard Center for Genome Studies (HCGS)

Principles of Genomics

Hubbard Center for Genome Studies (HCGS)

Introduction to Genomics and Bioinformatics modules

Hubbard Center for Genome Studies (HCGS)

Module 9 Redirecting Standard Out (pipe)

Hubbard Center for Genome Studies (HCGS)

Module 8 Search and Manipulate Files (grep)

Hubbard Center for Genome Studies (HCGS)

Module 12 .bashrc

Hubbard Center for Genome Studies (HCGS)

Module 13 File Permissions

Hubbard Center for Genome Studies (HCGS)

Module 14 Shell Scripts

Hubbard Center for Genome Studies (HCGS)

Module 15 Nohup

Hubbard Center for Genome Studies (HCGS)

Module 16 Trim Reads w Trimmomatic

Hubbard Center for Genome Studies (HCGS)

Module 17 Genome Assembly w SPAdes

Hubbard Center for Genome Studies (HCGS)

Module 18 Assembly Metrics w QUAST

Hubbard Center for Genome Studies (HCGS)

Module 19 Annotate a Genome w Prokka

Hubbard Center for Genome Studies (HCGS)

Module 10 Wildcards and Globbing

Hubbard Center for Genome Studies (HCGS)

Module 11 Variables and Parameter Substitutions

Hubbard Center for Genome Studies (HCGS)

Module 7a Edit and View Files w Nano

Hubbard Center for Genome Studies (HCGS)

Module 6 Odds and Ends

Hubbard Center for Genome Studies (HCGS)

Module 5 Move, Copy, and Delete

Hubbard Center for Genome Studies (HCGS)

Module 4 Moving Around

Hubbard Center for Genome Studies (HCGS)

Module 3 Pathways and Directories

Hubbard Center for Genome Studies (HCGS)

Module 2 Finding Help

Hubbard Center for Genome Studies (HCGS)

Module 1 Anatomy of a Command

Hubbard Center for Genome Studies (HCGS)

How to Use SSH to Connect to a Remote Server

Hubbard Center for Genome Studies (HCGS)