13:00Gromacs on Windows 5 Automating the MD simulation workflowScribbles in Bioinformatics155 views·7 months ago
14:09Gromacs on Windows 4- Running the NPT equilibration and Production simulationsScribbles in Bioinformatics58 views·7 months ago
16:24Gromacs on Windows 3- Indexing the Ligand and performing the NVT EquilibrationScribbles in Bioinformatics42 views·7 months ago
16:57Gromacs on Windows 2 Solvation, Charge Neutralization, and energy minimizationScribbles in Bioinformatics75 views·7 months ago
28:25Gromacs on Windows 1- Setting up the simulation and editing the topologiesScribbles in Bioinformatics140 views·7 months ago
14:39Free energy calculation by LIE Method using BFEERScribbles in Bioinformatics202 views·1 year ago
1:29:47Day5 Cluster analysis 2, MMPBSA, Linear Interaction Energy (LIE) Free energy estimationScribbles in Bioinformatics1.0K views·2 years ago
46:47Day4 Cluster Analysis part 1 (shifting from NAMD to Gromacs)Scribbles in Bioinformatics973 views·2 years ago
2:13:54Day3 Trajectory formatting, analysis (RMSD, RMSF, RG, Hydrogen bonding, salt bridges) and MoviesScribbles in Bioinformatics1.0K views·2 years ago
1:29:26Day2 Protein ligand simulation (parameterization, setting up and running the simulation)Scribbles in Bioinformatics1.3K views·2 years ago
2:34:03Day1 NAMD installation, setting up and Running protein in water simulationScribbles in Bioinformatics2.0K views·2 years ago
35:09Performing MD simulations on cloud platform - Google Colab and NAMDScribbles in Bioinformatics3.3K views·2 years ago
16:54AutoDock Parser- A tool for processing AutoDock output filesScribbles in Bioinformatics226 views·2 years ago
