Mohamed shehata

5.74K subscribers

70 videos

View on YouTube

Latest Videos

N-Glycans Modulate HIV-1 Env Conformational Plasticity

N-Glycans Modulate HIV-1 Env Conformational Plasticity

Mohamed shehata

224 views·1 year ago

Modeling missing loops of protein structure using Modeller interface in UCSF ChimeraX

Modeling missing loops of protein structure using Modeller interface in UCSF ChimeraX

Mohamed shehata

4.4K views·2 years ago

Extract Protein Sequences (FASTA) from PDB Files Using UCSF ChimeraX A Step-by-Step Tutorial

Extract Protein Sequences (FASTA) from PDB Files Using UCSF ChimeraX A Step-by-Step Tutorial

Mohamed shehata

2.1K views·2 years ago

Concatenating DCD Files into a Single DCD File with VMD Easy Tcl Script Tutorial

Concatenating DCD Files into a Single DCD File with VMD Easy Tcl Script Tutorial

Mohamed shehata

1.2K views·2 years ago

VMD tutorials NAMD Plot Plugin

VMD tutorials NAMD Plot Plugin

Mohamed shehata

2.1K views·2 years ago

ChimeraX tutorials [editing and cleaning PDB files]

ChimeraX tutorials [editing and cleaning PDB files]

Mohamed shehata

7.9K views·3 years ago

How to mutate a protein in UCSF Chimera

How to mutate a protein in UCSF Chimera

Mohamed shehata

8.1K views·3 years ago

How to calculate the net charge of a system with VMD

How to calculate the net charge of a system with VMD

Mohamed shehata

2.7K views·4 years ago

How to install UCSF Chimera in Ubuntu (Linux)

How to install UCSF Chimera in Ubuntu (Linux)

Mohamed shehata

10.7K views·4 years ago

NAMD FATAL ERROR ABNORMAL EOF FOUND - buffer=END

NAMD FATAL ERROR ABNORMAL EOF FOUND - buffer=END

Mohamed shehata

1.3K views·4 years ago

MDAnalysis tutorial ExtractSave atomic information as data arrays fromto PDB files (B_factors)

MDAnalysis tutorial ExtractSave atomic information as data arrays fromto PDB files (B_factors)

Mohamed shehata

5.0K views·5 years ago

Understanding Resolution values of Structures in Protein Data Bank

Understanding Resolution values of Structures in Protein Data Bank

Mohamed shehata

2.7K views·5 years ago

Movie Making from molecular dynamics simulation with VMD

Movie Making from molecular dynamics simulation with VMD

Mohamed shehata

40.7K views·5 years ago

MDtraj Tutorials- (5)- RMSF analysis of protein MD trajectory

MDtraj Tutorials- (5)- RMSF analysis of protein MD trajectory

Mohamed shehata

4.3K views·5 years ago

MDtraj Tutorials- (4)- RMSD analysis of protein MD trajectory

MDtraj Tutorials- (4)- RMSD analysis of protein MD trajectory

Mohamed shehata

5.6K views·5 years ago

MDtraj Tutorials- (3) atom selection language

MDtraj Tutorials- (3) atom selection language

Mohamed shehata

2.1K views·5 years ago

Python for computational chemistry -For Loops

Python for computational chemistry -For Loops

Mohamed shehata

4.0K views·5 years ago

MDtraj Tutorials- (2) Load, slice, align,combine,and save MDs trajectories

MDtraj Tutorials- (2) Load, slice, align,combine,and save MDs trajectories

Mohamed shehata

4.6K views·5 years ago

MDtraj Tutorials- (1) Introduction and Installation with Conda

MDtraj Tutorials- (1) Introduction and Installation with Conda

Mohamed shehata

5.3K views·5 years ago

VMD data analysis automatization (Part3) SASA and H-bonding analysis of trajectory

VMD data analysis automatization (Part3) SASA and H-bonding analysis of trajectory

Mohamed shehata

4.1K views·5 years ago

VMD data analysis automatization (part2) RMSF and Salt bridges analysis of trajectory

VMD data analysis automatization (part2) RMSF and Salt bridges analysis of trajectory

Mohamed shehata

4.0K views·5 years ago

VMD data analysis automatization (part1) Load, wrap, align, and calculate RMSD of trajectory

VMD data analysis automatization (part1) Load, wrap, align, and calculate RMSD of trajectory

Mohamed shehata

8.3K views·5 years ago

VMD Scripting How to rotate a protein around specific axis and save a new rotated pdb file

VMD Scripting How to rotate a protein around specific axis and save a new rotated pdb file

Mohamed shehata

7.3K views·5 years ago

Calculation of the number of solvent molecules around protein during molecular dynamics simulation

Calculation of the number of solvent molecules around protein during molecular dynamics simulation

Mohamed shehata

3.7K views·5 years ago

Python for computational chemistry -Tuples

Python for computational chemistry -Tuples

Mohamed shehata

3.2K views·5 years ago

Python for computational chemistry - Lists

Python for computational chemistry - Lists

Mohamed shehata

5.4K views·5 years ago

Python for computational chemistry -Lists - part two

Python for computational chemistry -Lists - part two

Mohamed shehata

3.1K views·5 years ago

How to calculate the radius of gyration for a protein using VMD

How to calculate the radius of gyration for a protein using VMD

Mohamed shehata

9.9K views·5 years ago

Steepest (Gradient) descent algorithm for energy minimization

Steepest (Gradient) descent algorithm for energy minimization

Mohamed shehata

4.0K views·5 years ago

Python for computational chemistry -Data types

Python for computational chemistry -Data types

Mohamed shehata

5.3K views·5 years ago

Load More Videos

Mohamed shehata - NatokHD | NatokHD