#12daysofbiopython
In Day 6 of 12 days of Biopython video I am going to show you how to get best aligned sequences with BLAST search using Biopython for one of COVID-19 proteins.
Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:26 Recap from day 5
0:36 Reading COVID 19 protein sequence from FASTA file
0:50 BLAST search with SearchIO Biopython module
1:24 Obtaining BLAST search record
1:35 Best alignments from BLAST search
2:06 Outro
You can find code/notebook connected to the topic here:
Github code:
https://github.com/lanacaldarevic/12-days-of-biopython/blob/main/12_days_of_biopython/day_06/day_06-blast_covid.ipynb
My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive!
Follow me on Twitter: https://twitter.com/lana_caldarevic
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Bioinformatics COVID-19 BLAST search using Biopython | NatokHD