#12daysofbiopython
In Day 5 of 12 days of Biopython video I am going to show you how to get COVID-19 genome sequence using Biopython and how to do brief analysis of COVID-19 genome using functions from Biopython.
Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:30 Entrez efetch() function for fetching coronavirus genome
1:09 Checking sequence length, molecular weight and GC content of covid-19 genome
1:40 Distribution of nucleotides in the genome
2:28 Transcription and translation
3:05 Distribution of amino acids in the genome
4:27 Proteins in covid genome
4:52 Longest protein in covid genome and saving it to FASTA file
5:09 Summary of findings
5:37 Outro
You can find code/notebook connected to the topic here:
Github code:
https://github.com/lanacaldarevic/12-days-of-biopython/blob/main/12_days_of_biopython/day_05/day_05-covid_analysis_biopython.ipynb
My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive!
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Bioinformatics COVID-19 Genome Sequence Analysis using Biopython | NatokHD