Compare GUPPY GPU with CPU for nanopore basecalling.
12 CPU i9 8.Gen
32 CPU core EPIC Zen2
1050GT
2060RTX
Nanopore community download (requires an account):
https://community.nanoporetech.com/downloads
The code:
guppy_basecaller -i fast5 -r -s output_fastq -c dna_r9.4.1_450bps_fast.cfg -x "cuda:0" --compress_fastq
