Snakemake #7 Using the "batch" argument to run your workflow in chunks

#Snakemake #Genomics #Bioinformatics A quick demonstration on how to use the "--batch" commandline argument to run your snakemake workflow into smaller chunks. This is for when you need to run a workflow with huge amount of jobs. Links to some useful documentation: - https://snakemake.readthedocs.io/en/stable/executing/cli.html#dealing-with-very-large-workflows This video is intended for those who are already familiar with Python and Bash. Please leave a comment if you have any questions. Versions: Python - 3.9.6 Snakemake - 7.0.1