actually scientist

6-year overview of my career My tips for beginner developers

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Snakemake #12 Using the `log` directive to store your debug information for your rule

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Snakemake #11 Submitting snakemake jobs to Slurm HPC cluster

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Snakemake #10 Limiting resource usage for your rules

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Snakemake #9 Using multiple threads to run your snakemake rules

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Singularity #3 Building containers from a definition file

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Singularity #2 How to build a container and the difference between SIF and sandbox container formats

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Best way to watch my videos (+ How I make my videos)

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Singularity #1 Introduction to Singularity and its difference with Docker

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Snakemake #8 Using wildcards to generalise your workflows and basic trouble shooting

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Snakemake #7 Using the batch argument to run your workflow in chunks

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Snakemake #6 Using Snakemake with Singularity for creating reproducible pipelines

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Snakemake #5 Importance of the first rule in your snakefile

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Snakemake #4 Including external snakefiles, modularization

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Snakemake #3 Using configfile in your snakemake pipeline

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Snakemake #2 How snakemake finds your Snakefile

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Snakemake #1 Writing your first Snakefile

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