Using TB-Profiler to analyse tuberculosis sequencing data

This presentation, led by Dr ⁨@linzyelton4592 from the Centre for Clinical Microbiology at UCL in the UK, looks at some common processed file types you might come across (e.g. .sam, .bam, .fasta and .vcf) as well as how to use the server-based version of the data analysis programme TB-Profiler to identify drug resistance SNPs and lineage information. For more information about this workshop, please visit the workshop page: https://pandora.tghn.org/training/tuberculosis-sequencing-using-oxford-nanopore-university-teaching-hospital-zambia/ For more information about the tuberculosis sequencing pipeline, please visit the TGHN hub page: https://pandora.tghn.org/sequencing/tuberculosis-sequencing-pipeline/ For image credits and links from the slides, please email [email protected]